#
#	This is Makefile for CTF Correction Demo.
#

#### Input extention ####
# These extensions must all be different.
INI_MRC_EXT=inimrc
INPUT_2D_EXT=2d
CTF_2D_EXT=prectf
FFT_2D_EXT=fft
CTF_INFO_EXT=ctfinfo
OUT_CTF_EXT=ctf

#### Suffixes rule ####

#### INCLUDE ####
-include Makefile.config

#### Definition ####
CCD=14.0

# Input FileName
INPUT=Input

### For mrcImageNoiseAdd
NSRATIO=0

### For mrcImageSiemensStar
SSTAR_SHAPE=0

## For mrcImageCTFObservation
CTF_KV=200
CTF_CS=2.1
CTF_DEFOCUS=27000
CTF_AIN=0.3	#need CTF_MODE +32
CTF_MODE=0

## For mrcImageCTFObservation 2
CTF2_KV=200
CTF2_CS=2.1
CTF2_DEFOCUS=9000
CTF2_AIN=0.3	#need CTF2_MODE +32
CTF2_MODE=0

#### For Works ####
JOP_NUM=-j 3


#### Rules of the list created ####

##### Commands #####
all3::
	make InitialCTFDataFromMRC;
	make ProcessForInput;
	make ProcessForInput2;
	make TIF2CTF2;
	make $(INPUT).tiff
	make $(INPUT)-2.tiff
	make ImageAverage;

all3S::
	make InitialSiemensStar;
	make ProcessForInput;
	make ProcessForInput2;
	make TIF2CTF2;
	make $(INPUT).tiff
	make $(INPUT)-2.tiff
	make ImageAverage;
	