# atomtype color radius van-der-waals-radii(used to determine bond)
H 0xCCCCCC 6 1.2
C lime 10 2.0
# for alpha carbon, not for calcium
Ca lime 10 2.0
N blue 10 2.0
O red 10 2.0
F 0xF8ABA6 10 2.0
Na 0xAFDFE4 12 2.0
Mg 0x001F43 14 2.5
S yellow 14 3.0
P 0xF8ABA6 14 3.0
Cl green 14 3.0
